Hello! I would like to create a new repo to host our bot code as opposed to using the my-bots template repo. What steps do I need to take to get this repo set up correctly?

You can use that repo as a template! The main thing is make sure that your build step is set up correctly (copy the package.json + esbuild), as well as maintaining some version of the medplum.config.json file

Sounds good, thank you for the help!